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mulea: An R package for enrichment analysis using multiple ontologies and empirical false discovery rate | BMC Bioinformatics

Approaches implemented in the mulea packageThe mulea R package provides two different approaches for functional enrichment analysis. For unranked sets of elements, such as significantly up- or...

PROFIT-seq – real-time and programmable transcriptome sequencing

Understanding the Challenge in RNA Sequencing The eukaryotic transcriptome is incredibly complex, with many types of RNA molecules—including messenger RNAs (mRNAs), non-coding RNAs, and circular RNAs—interacting within cells....

SPLANG—a synthetic poisson-lognormal-based abundance and network generative model for microbial interaction inference algorithms

Our synthetic Poisson-lognormal-based abundance and network generative model (SPLANG) draws on and extends the Poissson-lognormal generative model proposed by of Chiquet et al.27. In this section, we...

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A Sugar Coating for Arrokoth

Far from the Sun lurk icy rocks left over from the formation of our solar system 4.5 billion years ago. These objects are small...

gcplyr: an R package for microbial growth curve data analysis | BMC Bioinformatics

Monod J. The growth of bacterial cultures. Annu Rev Microbiol. 1949;3:371–94.Article  CAS  ...

Pictures from an organic chemistry laboratory

Pictures from an organic chemistry laboratory turned 8 today!During these years I have done...

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