A pan-cancer single-cell RNA-seq atlas of intratumoral B cells


Scientists are learning more about how our immune system responds to cancer—and a new study sheds light on a key player in this battle: B cells. While many people associate B cells with producing antibodies to fight infections, research shows that these immune cells also play important roles inside tumors. However, scientists have long struggled to fully classify the different types of B cells found within tumors and understand how they affect cancer progression and treatment outcomes.
In this study, researchers at the University College London Cancer Institute used single-cell RNA sequencing (scRNA-seq), a cutting-edge technology that examines gene activity in individual cells. This allowed them to create a detailed atlas of tumor-infiltrating B and plasma cells across many cancer types. Let’s break down what they discovered and why it matters.

B Cells in the Tumor Microenvironment: Not All Are the Same
The researchers found that not all B cells in tumors are identical. They identified distinct B cell subpopulations, each with unique genetic signatures. This diversity means that some B cells might promote cancer growth, while others may help the immune system fight back. Mapping out these differences helps scientists better understand how the tumor environment shapes B cell behavior—and how these cells influence the course of cancer.
B Cells and Cancer Immunotherapy
One of the most exciting parts of the study looked at how different B cell subtypes affect checkpoint inhibitor therapy—a type of immunotherapy that helps the immune system attack tumors. The researchers discovered that some B cell subtypes were linked to better responses to these therapies, while others were not. This suggests that knowing more about the B cells present in a patient’s tumor could help doctors predict how well they might respond to immunotherapy.
Crosstalk Between B Cells and T Cells
The study also explored how B cells and T cells communicate within tumors. By analyzing specific ligand-receptor pairs—molecules that cells use to send signals to each other—the researchers uncovered unique ways certain B cell subpopulations interact with T cells. These findings were even validated with spatial analysis, confirming that the cells interact in specific locations within the tumor. This type of communication could be crucial in determining whether the immune system mounts an effective response against cancer.
Why This Research is Important
This comprehensive atlas of tumor-infiltrating B cells provides a valuable resource for future research. Understanding the complexity and diversity of B cells in tumors could lead to better diagnostic tools and more personalized cancer treatments. By knowing which B cell subtypes are present, scientists may develop more targeted therapies that work with the immune system to improve outcomes for cancer patients.
In summary, this study highlights the importance of tumor-infiltrating B cells in cancer biology. With this new atlas in hand, researchers are one step closer to unlocking the full potential of the immune system in fighting cancer—and opening up new possibilities for innovative therapies.
Availability – The Shiny tool can be accessed at https://tigilab.shinyapps.io/shinyapp_labelled/.

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