Plaza PI, Blanco G, Lambertucci SA. Implications of bacterial, viral and mycotic microorganisms in vultures for wildlife conservation, ecosystem services and public health. Ibis. 2020;162(4):1109–24.ArticleÂ
Google ScholarÂ
Karim N, Afroj S, Lloyd K, Oaten LC, Andreeva DV, Carr C, Farmery AD, Kim ID, Novoselov KS. Sustainable personal protective clothing for healthcare applications: a review. ACS Nano. 2020;14(10):12313–40.ArticleÂ
CASÂ
PubMedÂ
PubMed CentralÂ
Google ScholarÂ
Weischenfeldt J, Symmons O, Spitz F, Korbel JO. Phenotypic impact of genomic structural variation: insights from and for human disease. Nat Rev Genet. 2013;14(2):125–38.ArticleÂ
CASÂ
PubMedÂ
Google ScholarÂ
Li M, Wang IX, Li Y, Bruzel A, Richards AL, Toung JM, Cheung VG. Widespread RNA and DNA sequence differences in the human transcriptome. Science. 2011;333(6038):53–8.ArticleÂ
CASÂ
PubMedÂ
PubMed CentralÂ
Google ScholarÂ
Lodish, Harvey F. Translational control of protein synthesis. Annu Rev Biochem. 1976;45(1):39–72 (Annual Reviews 4139 El Camino Way, PO Box 10139, Palo Alto, CA 94303-0139, USA).ArticleÂ
CASÂ
PubMedÂ
Google ScholarÂ
Barnes DJ, Chu DF. Introduction to modelling for biosciences. London: Springer; 2010.BookÂ
Google ScholarÂ
Mehra A, Hatzimanikatis V. An algorithmic framework for genome-wide modeling and analysis of translation networks. Biophys J. 2006;90(4):1136–46 (Elsevier).ArticleÂ
CASÂ
PubMedÂ
Google ScholarÂ
Garai A, Chowdhury D, Chowdhury D, Ramakrishnan TV. Stochastic kinetics of ribosomes: single motor properties and collective behavior. Phys Rev E: Stat, Nonlinear, Soft Matter Phys. 2009;80(1): 011908.ArticleÂ
Google ScholarÂ
Zhao Y-B, Krishnan J. Probabilistic Boolean network modelling and analysis framework for mRNA translation. IEEE/ACM Trans Comput Biol Bioinf. 2015;13(4):754–66 (IEEE).ArticleÂ
Google ScholarÂ
Khatter H, Myasnikov AG, Mastio L, Billas IML, Birck C, Stella S, Klaholz BP. Purification, characterization and crystallization of the human 80S ribosome. Nucl Acids Res. 2014;42(6):e49–e49 (Oxford University Press).ArticleÂ
CASÂ
PubMedÂ
PubMed CentralÂ
Google ScholarÂ
Heinrich R, Rapoport TA. Mathematical modelling of translation of mRNA in eucaryotes; steady states, time-dependent processes and application to reticulocytest. J Theory Biol. 1980;86(2):279–313 (Elsevier).ArticleÂ
CASÂ
Google ScholarÂ
von der Haar T. Mathematical and computational modelling of ribosomal movement and protein synthesis: an overview. Comput Struct Biotechnol J. 2012;1:1–7.
Google ScholarÂ
Tour JM. Molecular electronics. Synth Test Compon, Acc Chem Res. 2000;33(11):791–804.ArticleÂ
CASÂ
Google ScholarÂ
Boneh D, Dunworth C, Lipton RJ, Sgall J. On the computational power of DNA. Discret Appl Math. 1996;71(1–3):79–94.ArticleÂ
Google ScholarÂ
Ehrenfeucht A, Harju T, Petre I, Rozenberg G. Characterizing the micronuclear gene patterns in ciliates. Theory Comput Syst. 2002;35(5):501–19.ArticleÂ
Google ScholarÂ
Balan MS, Krithivasan K, Sivasubramanyam Y. Peptide computing-universality and complexity. Berlin: Springer; 2001. p. 290–9.
Google ScholarÂ
Nolte DD. Mind at light speed: anew kind of intelligence. New York: Simon, and Schuster; 2001.
Google ScholarÂ
Pratima C, Mayukh S, Prasun G. Computing in ribosomes: performing boolean logic using mrna-ribosome system, VLSI (ISVLSI), 2016 IEEE computer society annual symposium on, 2016; pp. 260–265, USA.Pratima C, Mayukh S, Prasun G. Computing in ribosomes: implementing sequential circuits using mRNA-ribosome system, nanoelectronic and information systems (iNIS), In: 2016 IEEE International Symposium on, 2016. pp. 230–235, India.Pratima C, Prasun G. Realizing all logic operations using mRNA-ribosome system as a post Si alternative. Nanoelectronic, and information systems (iNIS), In: 2017 IEEE international symposium on, 2017. pp. 40–45, India.Spirin AS. Ribosome as a molecular machine. FEBS Lett. 2002;514:2–10.ArticleÂ
CASÂ
PubMedÂ
Google ScholarÂ
Merrick WC, Pavitt GD. Protein synthesis initiation in eukaryotic cells. Cold Spring Harb Perspect Biol. 2018;10(12):a033092 (Cold Spring Harbor Lab).ArticleÂ
CASÂ
PubMedÂ
PubMed CentralÂ
Google ScholarÂ
Lee K, Holland-Staley CA, Cunningham PR. Genetic approaches to studying protein synthesis: effects of mutations at \(\Psi\)516 and A535 in Escherichia coli 16S rRNA. J Nutr. 2001;131(11):2994S-3004S (Elsevier).ArticleÂ
CASÂ
PubMedÂ
Google ScholarÂ
Hardesty B, Kramer G. Structure, function, and genetics of ribosomes. Berlin: Springer Science Business Media; 2012.
Google ScholarÂ
Yusupov MM, Yusupova GZ, Baucom A, Lieberman K, Earnest TN, Cate JHD, Noller HF. Crystal structure of the ribosome at 5.5 Ã… resolution. Science. 2001;292(5518):883–96.ArticleÂ
CASÂ
PubMedÂ
Google ScholarÂ
Noller HF. Evolution of protein synthesis from an RNA world. Cold Spring Harb Perspect Biol. 2012;4(4):a003681 (Cold Spring Harbor Lab).ArticleÂ
PubMedÂ
PubMed CentralÂ
Google ScholarÂ
Kozak M. Point mutations define a sequence flanking the AUG initiator codon that modulates translation by eukaryotic ribosomes. Cell. 1986;44:283–92.ArticleÂ
CASÂ
PubMedÂ
Google ScholarÂ
Bayfield MA, Thompson J, Dahlberg AE. The A2453-C2499 wobble base pair in Escherichia coli 23S ribosomal RNA is responsible for pH sensitivity of the peptidyltransferase active site conformation. Nucl Acids Res. 2004;32:5512–8.ArticleÂ
CASÂ
PubMedÂ
PubMed CentralÂ
Google ScholarÂ
Hodgkin J. Genetic suppression, WormBook: the online review of C. elegans biology. 2005;1–13.Giegé R, Puglisi JD, Florentz C. tRNA structure and aminoacylation efficiency. Prog Nucl Acid Res Mol Biol. 1993;45:129–206.ArticleÂ
Google ScholarÂ
Ibba M, Söll D. Aminoacyl-tRNA synthesis. Annu Rev Biochem. 2000;69(1):617–50.ArticleÂ
CASÂ
PubMedÂ
Google ScholarÂ
Sprinzl M, Horn C, Brown M, Ioudovitch A, Steinberg S. Compilation of tRNA sequences and sequences of tRNA genes. Nucl Acids Res. 1998;26:148–53.ArticleÂ
CASÂ
PubMedÂ
PubMed CentralÂ
Google ScholarÂ
Selmer M, Dunham CM, Murphy FV, Weixlbaumer A, Petry S, Kelley AC, Weir JR, Ramakrishnan V. Structure of the 70S ribosome complexed with mRNA and tRNA. Science. 2006;313:1935–42.ArticleÂ
CASÂ
PubMedÂ
Google ScholarÂ
Pelham, Hugh RB, JACKSON, Richard J. An efficient mRNA-dependent translation system from reticulocyte lysates. Eur J Biochem. 1976;67:247–56.ArticleÂ
CASÂ
PubMedÂ
Google ScholarÂ
Yusupova GZ, Yusupov MM, Cate JHD, Noller HF. The Path of Messenger RNA through the Ribosome. Cell. 2001;106:233–41.ArticleÂ
CASÂ
PubMedÂ
Google ScholarÂ
Nagata S, Hamasaki T, Uetake K, Masuda H, Takagaki K, Oka N, Wada T, Ohgi T, Yano J. Synthesis and biological activity of artificial mRNA prepared with novel phosphorylating reagents. Nucl Acids Res. 2010;38(21):7845–57 (Oxford University Press).ArticleÂ
CASÂ
PubMedÂ
PubMed CentralÂ
Google ScholarÂ
Orelle C, Carlson ED, Szal T, Florin T, Jewett MC, Mankin AS. Protein synthesis by ribosomes with tethered subunits. Nature. 2015;524:119.ArticleÂ
CASÂ
PubMedÂ
Google ScholarÂ
Chen H, Bjerknes M, Kumar R, Jay E. Determination of the optimal aligned spacing between the Shine-Dalgarno sequence and the translation initiation codon of Escherichia coli m RNAs. Nucl Acids Res. 1994;22(23):4953–7.ArticleÂ
CASÂ
PubMedÂ
PubMed CentralÂ
Google ScholarÂ
Alberts B. Molecular Biology of the Cell. Milton Park: Taylor and Francis Group; 2018.
Google ScholarÂ
Chatterjee P, Ghosal P. Computing in ribosome: logic gates implementation using the mRNA-ribosome system. CSI Trans ICT. 2017;6:39–50.ArticleÂ
Google ScholarÂ
Ramu H, Mankin A, Vazquez-Laslop N. Programmed drug-dependent ribosome stalling. Mol Microbiol. 2009;71(4):811–24 (Wiley Online Library).ArticleÂ
CASÂ
PubMedÂ
Google ScholarÂ
Chatterjee P, Ghosal P. Realization of arithmetic operations using a combined computational unit in ribosomal computing. J Inst Eng (India): Ser B. 2023;104(2):461–73.
Google ScholarÂ
Wohlgemuth I, Pohl C, Mittelstaet J, Konevega AL, Rodnina MV. Evolutionary optimization of speed and accuracy of decoding on the ribosome. Philos Trans R Soc B: Biol Sci. 2011;366(1580):2979–89.ArticleÂ
CASÂ
Google ScholarÂ