NotationsFor two vectors ({{bf{u}}}in {{mathbb{R}}}^{{n}_{u}}) and ({{bf{v}}}in {{mathbb{R}}}^{{n}_{v}}), we use the notations:({left({{bf{u}}}otimes {{bf{v}}}right)}_{{ij}}={u}_{i}{v}_{j}) and ({left({{bf{u}}}oplus {{bf{v}}}right)}_{{ij}}={u}_{i}+{v}_{j}). For two matrices ({{bf{U}}}in {{mathbb{R}}}^{ntimes d}) and ({{bf{V}}}in...
Characteristics of datasetsThe study was performed in accordance with relevant guidelines and regulations. The study was approved by the Institutional Review Board at Weill...
Zemla, A., Venclovas, C., Fidelis, K. & Rost, B. A modified definition of Sov, a segment-based measure for protein secondary structure prediction assessment. Proteins...
Computational methodsThe computational methods are organized into three primary sections. The first section focuses on the development of the Rosetta general forcefield for virtual...
