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Learning chemical sensitivity reveals mechanisms of cellular response

Pharmacogenomic datasetDrug sensitivity data was obtained from the Cancer Therapeutic Response Portal v1 and v2 (CTRP v1/2). These datasets comprise 864 cell line responses...

scBubbletree: computational approach for visualization of single cell RNA-seq data | BMC Bioinformatics

Study A: exploring sample of five cancer cell linesGenerating the bubbletreeWe know that dataset A contains a mixture of five cancer cell lines. Hence,...

Distinguishing word identity and sequence context in DNA language models | BMC Bioinformatics

The final source code is available as Sanabria Melissa, Hirsch Jonas, & Poetsch Anna R. (2023). Distinguishing word identity and sequence context in DNA...

Boundary-aware convolutional attention network for liver segmentation in ultrasound images

We have selected several excellent image segmentation algorithms for comparative experiments, including UNet9, RDeeplab42, TransUNet15, UNeXt43, LWBNAUNet44, and SegNeXt35. RDeeplab is an improved structure...

Integrative analysis of pan-cancer single-cell data reveals a tumor ecosystem subtype predicting immunotherapy response

ICI scRNA-Seq cohortsWe downloaded 5 ICI scRNA-Seq cohorts from the TISCH2 portal (http://tisch.comp-genomics.org/)11. The standard scRNA-Seq workflow were already completed by TISCH2 portal including...

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