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FindCSV: a long-read based method for detecting complex structural variations | BMC Bioinformatics

The design of FindCSVThe detection of CSVs faces two significant challenges, as discussed in the previous section. The first challenge is the absence of...

Do mutualist limitations hinder ectomycorrhizal tree seedling establishment in North American secondary forests?

Andrew Cortese, from Michigan State University, discusses his article: Ectomycorrhizal tree islands in arbuscular mycorrhizal forests: hotspots of fungal inoculum important for seedling establishment...

SpeciateIT and vSpeciateDB: novel, fast, and accurate per sequence 16S rRNA gene taxonomic classification of vaginal microbiota | BMC Bioinformatics

Estimates of classification accuracy for novel sequences were obtained using tenfold cross validation. To ensure confidence in assignments, SpeciateIT imposes model-specific classification error thresholds:...

DiscovEpi: automated whole proteome MHC-I-epitope prediction and visualization | BMC Bioinformatics

The adaptive immune response is a complex and tightly regulated defence mechanism that protects the human host from a wide range of pathogens. It...

Utilization of a natural language processing-based approach to determine the composition of artifact residues | BMC Bioinformatics

Mathematical modelA novel functionality of our approach is to introduce a new and automated method to compare the mass spectral feature similarities between experimental...

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