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ST-GEARS: Advancing 3D downstream research through accurate spatial information recovery

FGW OT descriptionFused Gromov Wasserstein (FGW) Optimal Transport (OT) is the modeling of spot-wise or cell-wise similarity between two sections, with the purpose of...

Editor’s Choice (112:09): How do yellow-necked mice & common oaks navigate a dynamic mutualism?

The editor’s choice for our September issue is ‘Scatterhoarder abundance and advantages of seed burial drive dynamics of a tree–rodent interaction‘, by Rafał Zwolak et al.:  This study...

Machine learning-based risk prediction model construction of difficult weaning in ICU patients with mechanical ventilation

Study participantsA total of 564 patients who met the study inclusion criteria were collected from the third-class first-class general hospital. Among them, 37 patients...

Intracellular spatial transcriptomic analysis toolkit (InSTAnT)

Source dataSource data are provided with this paper.Statistics and reproducibilityMERFISH data were generated on one sample of U2OS cell line (described above), and the...

Long intergenic non-coding RNAs modulate proximal protein-coding gene expression and tolerance to Candidatus Liberibacter spp. in potatoes

Genome-wide identification of potato lincRNAsTo identify and understand the function of lincRNAs during the progression of ZC disease, we performed RNA-seq of healthy (CT;...

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