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CNVoyant a machine learning framework for accurate and explainable copy number variant classification

CNVoyant’s target audience comprises individuals determining the role of a CNV in a suspected genomic disorder. This diverse group of clinical genomicists includes variant...

Identification of immune patterns in idiopathic pulmonary fibrosis patients driven by PLA2G7-positive macrophages using an integrated machine learning survival framework

Association between abundant immune cell infiltration, key gene modules, and adverse prognosis in IPF patients: unsupervised clustering analysis across multiple cohortsFigure 1 illustrates the key...

Generative language models on nucleotide sequences of human genes

The dataset and the code used for implementing the ideas described in this paper is reproducible and available online at https://github.com/boun-tabi/GenerativeLM-Genes for all different...

Widespread biochemical reaction networks enable Turing patterns without imposed feedback

A systematic search for Turing pattern enabling reaction networks without imposed feedbackTo address the question of whether common biochemical reactions with no apparent feedback...

Intratumoral microbiota as a novel prognostic indicator in bladder cancer

Presence of intratumoral microbiota in BLCAThe flowchart of the present study is shown in Fig. 1. To investigate the presence of microbiota in bladder cancer,...

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